A simple dimerization-decomposition. An simplfied, abstract signal transduction pathway. Generic kinase and phosphatase reactions, multiple phosphorylation sites, nucleotide (ATP, etc.) binding. | G-protein coupled receptor complex in the alpha pathway. Nucleotide exchange reaction. G-protein auto-hydrolysis reaction, G-protein hetero-hydrolysis reaction (Sst2). Receptor and scaffolding complexes from the alpha pathway. Localized protein kinase cascade reactions. Continuing a moleculizer simulation after it has timed out, or from any state. |
* These demos take somewhat longer than the rest, so that they are not automatically run when you execute "make" in the demo directory. To make these demos, run "make long" in the demo directory. On a 2 GHz Xeon machine, "make long" takes less than 12 minutes.